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white shrimp (Litopenaeus vannamei) population[J]. entage assignment panel for the silver lipped pearl oyster
Aquaculture Reports, 2021, 20: 100691. (Pinctada maxima)[J]. Aquaculture Reports, 2021, 20:
[14] Francis R M. POPHELPER: An R package and web app 100687.
to analyse and visualize population structure[J]. Molecu- [25] Arbon P M, Silva C N S, Jones D B, et al. Development
lar Ecology Resources, 2017, 17(1): 27-32. and validation of a SNP-based genotyping tool for pedi-
[15] Felsenstein J. PHYLIP (Phylogeny Inference Package), gree establishment in Australian greenlip abalone Hali-
Version 3.5 c[M]. Version Seattle: University of Wash- otis laevigata Donovan, 1808[J]. Aquaculture Reports,
ington, 1993. 2021, 20: 100746.
[16] Yu G C, Smith D K, Zhu H C, et al. GGTREE: An R
[26] 申淑慧, 戴习林. 基于生长和抗逆功能基因SNP分子标
package for visualization and annotation of phylogenetic
记的凡纳滨对虾野生及选育群体遗传多样性分析[J].
trees with their covariates and other associated data[J].
南方农业学报, 2020, 51(11): 2836-2845.
Methods in Ecology and Evolution, 2017, 8(1): 28-36.
Shen S H, Dai X L. Genetic diversity analysis in wild
[17] Botstein D, White R L, Skolnick M H, et al. Construc-
and selected populations of Penaeus vannamei based on
tion of a genetic linkage map in man using restriction
SNP markers in growth and stress resistance genes[J].
fragment length polymorphisms[J]. American Journal of
Journal of Southern Agriculture, 2020, 51(11): 2836-
Human Genetics, 1980, 32(3): 314-331.
2845 (in Chinese).
[18] Danecek P, Auton A, Abecasis G, et al. The variant call
[27] Falconer D S. Introduction to Quantitative Genetics[M].
format and VCFtools[J]. Bioinformatics, 2011, 27(15):
Harlow: Longman, 1996.
2156-2158.
[28] Macedo F L, Christensen O F, Astruc J M, et al. Bias
[19] Yang J, Benyamin B, McEvoy B P, et al. Common SNPs
and accuracy of dairy sheep evaluations using BLUP and
explain a large proportion of the heritability for human
SSGBLUP with metafounders and unknown parent
height[J]. Nature Genetics, 2010, 42(7): 565-569.
groups[J]. Genetics Selection Evolution, 2020, 52(1): 47.
[20] Gilmour A R, Gogel B J, Cullis B R, et al. ASReml User
[29] Legarra A, Aguilar I, Misztal I. A relationship matrix
Guide Release 4.1 Structural Specification[M]. Hemel
including full pedigree and genomic information[J].
Hempstead: VSN international ltd, 2015.
Journal of Dairy Science, 2009, 92(9): 4656-4663.
[21] Robertson A, Lerner I M. The heritability of all-or-none
[30] Hayes B J, Visscher P M, Goddard M E. Increased
traits: Viability of poultry[J]. Genetics, 1949, 34(4): 395-
accuracy of artificial selection by using the realized rela-
411.
[22] Agarwal D, Aich N, Pavan-Kumar A, et al. SNP mining tionship matrix[J]. Genetics Research, 2009, 91(1): 47-
60.
in transcripts and concomitant estimation of genetic vari-
ation in Macrobrachium rosenbergii stocks[J]. Conser- [31] Argue B J, Arce S M, Lotz J M, et al. Selective breeding
vation Genetics Resources, 2016, 8(2): 159-168. of Pacific white shrimp (Litopenaeus vannamei) for
[23] Larson W A, Seeb L W, Everett M V, et al. Genotyping growth and resistance to Taura Syndrome Virus[J].
by sequencing resolves shallow population structure to Aquaculture, 2002, 204(3-4): 447-460.
inform conservation of Chinook salmon (Oncorhynchus [32] Gitterle T, Rye M, Salte R, et al. Genetic (co) variation
tshawytscha)[J]. Evolutionary Applications, 2014, 7(3): in harvest body weight and survival in Penaeus (Litopen-
355-369. aeus) vannamei under standard commercial
[24] Massault C, Jones D B, Zenger K R, et al. A SNP par- conditions[J]. Aquaculture, 2005, 243(1-4): 83-92.

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