Page 174 - 《水产学报》2025年第11期
P. 174
杨锦毅,等 水产学报, 2025, 49(11): 119314
Wang M, Yang X, Wang W, et al. Fish diversity in chongqing Yangtze River estuary[J]. Acta Hydrobiologica Sinica, 2023,
section of the national nature reserve for rare and endemic fish 47(3): 365-375 (in Chinese).
in the upper Yangtze River based on eDNA technology[J]. Acta [23] Andriyono S, Alam M J, Kim H W. Environmental DNA
Hydrobiologica Sinica, 2022, 46(1): 2-16 (in Chinese). (eDNA) metabarcoding: diversity study around the Pondok
[14] Cheng R L, Luo Y, Li Q H, et al. Application of eDNA Dadap fish landing station, Malang, Indonesia[J]. Biodiversitas
metabarcoding for monitoring the fish diversity of the Jiangjin Journal of Biological Diversity, 2019, 20(12): 3772-3781.
to Fuling section of the upper reaches of the Yangtze River[J]. [24] 杨海乐, 沈丽, 何勇凤, 等. 长江水生生物资源与环境本底状
Hydrobiologia, 2023, 850(19): 4067-4088, 况调查 (2017—2021)[J]. 水产学报, 2023, 47(2): 029301.
[15] Ratnasingham S, Hebert P D N. BOLD: the Barcode of Life Yang H L, Shen L, He Y F, et al. Status of aquatic organisms
Data System (http://www.barcodinglife.org)[J]. Molecular Eco- resources and their environments in the Yangtze River system
logy Notes, 2007, 7(3): 355-364. (2017 —2021)[J]. Journal of Fisheries of China, 2023, 47(2):
[16] 陈治, 蔡杏伟, 张清凤, 等. 海南岛淡水鱼类环境 DNA 宏条形 029301 (in Chinese).
码参考数据库的初步构建及比较分析 [J]. 南方水产科学, [25] Bylemans J, Furlan E M, Gleeson D M, et al. Does size matter?
2022, 18(3): 1-12. An experimental evaluation of the relative abundance and decay
Chen Z, Cai X W, Zhang Q F, et al. Preliminary construction rates of aquatic environmental DNA[J]. Environmental Science
and comparative analysis of environmental DNA metabarcod- & Technology, 2018, 52(11): 6408-6416.
ing reference database of freshwater fishes in Hainan Island[J]. [26] Taberlet P, Bonin A, Zinger L, et al. Environmental DNA: for
South China Fisheries Science 2022, 18(3): 1-12 (in Chinese). biodiversity research and monitoring[M]. Oxford: Oxford Uni-
[17] Stackebrandt E, Goebel B M. Taxonomic note: a place for DNA- versity Press, 2018.
DNA reassociation and 16S rRNA sequence analysis in the [27] Evans N T, Olds B P, Renshaw M A, et al. Quantification of
present species definition in bacteriology[J]. International mesocosm fish and amphibian species diversity via environ-
Journal of Systematic and Evolutionary Microbiology, 1994, mental DNA metabarcoding[J]. Molecular Ecology Resources,
44(4): 846-849. 2016, 16(1): 29-41.
[18] Kauserud H, Mathiesen C, Ohlson M. High diversity of fungi [28] Balasingham K D, Walter R P, Heath D D. Residual eDNA
associated with living parts of boreal forest bryophytes[J]. Bot- detection sensitivity assessed by quantitative real-time PCR in a
any, 2008, 86(11): 1326-1333. river ecosystem[J]. Molecular Ecology Resources, 2017, 17(3):
[19] Nakagawa H, Yamamoto S, Sato Y, et al. Comparing local‐ 523-532.
and regional‐scale estimations of the diversity of stream fish [29] Larkin M A, Blackshields G, Brown N P, et al. Clustal W and
using eDNA metabarcoding and conventional observation Clustal X version 2.0[J]. Bioinformatics, 2007, 23(21): 2947-
methods[J]. Freshwater Biology, 2018, 63(6): 569-580. 2948.
[20] Miya M, Sato Y, Fukunaga T, et al. MiFish, a set of universal [30] Kumar S, Stecher G, Tamura K. MEGA7: molecular evolution-
PCR primers for metabarcoding environmental DNA from ary genetics analysis version 7.0 for bigger datasets[J]. Molecu-
fishes: detection of more than 230 subtropical marine lar Biology and Evolution, 2016, 33(7): 1870-1874.
species[J]. Royal Society Open Science, 2015, 2(7): 150088. [31] Virtanen P, Gommers R, Oliphant T E, et al. SciPy 1.0: funda-
[21] Leray M, Knowlton N. DNA barcoding and metabarcoding of mental algorithms for scientific computing in Python[J]. Nature
standardized samples reveal patterns of marine benthic Methods, 2020, 17(3): 261-272.
diversity[J]. Proceedings of the National Academy of Sciences, [32] R Core Team. R: a language and environment for statistical
2015, 112(7): 2076-2081. computing[J]. R Foundation for Statistical Computing, 2023.
[22] 王汝贤, 杨刚, 耿智, 等. 环境 DNA 技术在长江口鱼类多样性 https://www.R-project.org.
分析中的应用 [J]. 水生生物学报, 2023, 47(3): 365-375. [33] Lex A, Gehlenborg N, Strobelt H, et al. UpSet: visualization of
Wang R X, Yang G, Geng Z, et al. Application of environ- intersecting sets[J]. IEEE Transactions on Visualization and
mental DNA technology in fish diversity analysis in the Computer Graphics, 2014, 20(12): 1983-1992.
https://www.china-fishery.cn 中国水产学会主办 sponsored by China Society of Fisheries
10

